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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs150704838 chr2:201746389 C/CA 2.25E-5 191 13.72 12.13 7.68 KM Plot
LIHC rs150768351 chr3:119432041 G/A 2.93E-12 190 12.9 18.23 0.2 KM Plot
LIHC rs150873275 chr1:224640615 A/G 0.000112 191 13.57 13.37 5.25 KM Plot
LIHC rs151045790 chr13:46641324 TA/TAA 0.000108 188 12.87 20.03 12.07 KM Plot
LIHC rs1539207 chr1:224569921 A/G 1.6E-6 192 13.55 13.87 2.17 KM Plot
LIHC rs1539379 chr6:44115864 A/G 9.47E-5 192 13.58 9.43 3.67 KM Plot
LIHC rs1544196 chr1:224632782 G/A 0.000109 192 13.58 13.37 5.25 KM Plot
LIHC rs1545745 chr4:88816732 C/T 8.97E-7 192 13.83 12.53 1.13 KM Plot
LIHC rs1547526 chr4:44700453 G/C 2.05E-5 192 4.57 13.53 16.07 KM Plot
LIHC rs156112 chr5:131610232 A/G 6.69E-5 192 7.43 6.1 13.85 KM Plot
LIHC rs1599529 chr13:76627658 A/T 9.1E-10 192 13.13 22.95 0.63 KM Plot
LIHC rs1602476 chr4:44646006 T/A 6.05E-5 189 5.7 13.17 16.6 KM Plot
LIHC rs1602477 chr4:44646143 C/T 6.05E-5 188 5.7 13.17 16.33 KM Plot
LIHC rs1608713 chr7:64432221 G/C 4.0E-12 192 1.77 5.7 13.97 KM Plot
LIHC rs1608715 chr7:64443331 G/A 4.0E-12 192 1.77 5.7 13.97 KM Plot